13-Aug-2004 14:07:27 LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University ___________________________________________________________________ CYANA 1.0.6 (gnu-lam) Copyright (c) 2002 Peter Guntert Contains CANDID, copyright (c) 2002 Peter Guntert, Torsten Herrmann All rights reserved. ___________________________________________________________________ cyana> cyana> cyana> - at3g51030: read lib /s/src/cyana-1.0.6/lib/cyana.lib Library file "/s/src/cyana-1.0.6/lib/cyana.lib" read, 50 residue types. - at3g51030: read seq ./at3g51030.seq Sequence file "./at3g51030.seq" read, 124 residues. - at3g51030: peakcheck peaks=c13no,n15no,c13noar prot=at3g51030 ------------------------------------------------------------ Peak list : c13no Proton list: at3g51030 - peakcheck: read prot at3g51030 unknown=warn Chemical shift list "at3g51030.prot" read, 1247 chemical shifts. - peakcheck: read peaks c13no Peak list "c13no.peaks" read, 2699 peaks, 2499 assignments. - peakcheck: atom shift unusual Atom shift limit1 - limit2 HB3 ASP- 44 1.345 1.700 3.780 CE3 TRP 49 121.953 117.630 121.930 NE1 TRP 49 134.864 126.260 132.070 N GLY 51 121.378 99.100 120.100 CG PRO 52 28.730 24.100 28.600 N CYSS 53 110.833 111.200 132.300 CG1 ILE 56 31.788 16.500 30.870 CA ALA 57 57.398 47.150 57.300 QE PHE 60 7.630 5.560 7.510 HA ALA 64 2.841 2.940 6.160 HN VAL 83 6.591 6.680 10.150 HD1 TRP 87 7.750 5.930 7.430 HZ2 TRP 87 7.614 6.290 7.570 CA ILE 119 66.884 55.200 66.600 14 shifts outside expected range. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HN GLU- 29 8.295 8.315 0.031 5 1 shift with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 2441 1 0.031 HN GLU- 29 1 deviations larger than tolerance. ------------------------------------------------------------ Peak list : n15no Proton list: at3g51030 - peakcheck: read prot at3g51030 unknown=warn Chemical shift list "at3g51030.prot" read, 1247 chemical shifts. - peakcheck: read peaks n15no Peak list "n15no.peaks" read, 1106 peaks, 1023 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HA TRP 27 4.494 4.494 0.032 3 HN ASP- 62 7.855 7.855 0.032 11 HA PHE 97 5.363 5.354 0.037 3 3 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 344 1 -0.032 HA TRP 27 1011 1 -0.037 HA PHE 97 1344 1 0.032 HN ASP- 62 3 deviations larger than tolerance. ------------------------------------------------------------ Peak list : c13noar Proton list: at3g51030 - peakcheck: read prot at3g51030 unknown=warn Chemical shift list "at3g51030.prot" read, 1247 chemical shifts. - peakcheck: read peaks c13noar Peak list "c13noar.peaks" read, 240 peaks, 211 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks 0 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 0 deviations larger than tolerance. - at3g51030: read prot ./at3g51030.prot Chemical shift list "./at3g51030.prot" read, 1247 chemical shifts. - at3g51030: read peaks ./c13no.peaks assigned integrated Peak list "./c13no.peaks" read, 2499 peaks, 2499 assignments. - at3g51030: peaks set volume=abs(volume) Volume of 2499 peaks set. - at3g51030: atom shift check Atom Residue Shift Median Deviation Peaks HN GLU- 29 8.295 8.315 0.031 5 1 shift with spread larger than tolerance. - at3g51030: caliba bb=5.0E+06 dmax=5.5 Calibration class: backbone 741 of 2499 peaks, 741 of 2499 assignments selected. Calibration function: 5.00E+06 * 1/d**6 622 upper limits added, 0 at lower, 5 at upper limit, average 3.99 A. Calibration class: side-chain 1101 of 2499 peaks, 1101 of 2499 assignments selected. 1101 of 2499 peaks, 1101 of 2499 assignments selected. Calibration function: 8.68E+05 * 1/d**4 829 upper limits added, 17 at lower, 321 at upper limit, average 4.99 A. Calibration class: methyl 657 of 2499 peaks, 657 of 2499 assignments selected. Calibration function: 2.89E+05 * 1/d**4 583 upper limits added, 9 at lower, 107 at upper limit, average 5.65 A. - at3g51030: write upl c13no_cal.upl Distance constraint file "c13no_cal.upl" written, 2034 upper limits, 2034 assignments. - at3g51030: distance delete 2034 distance constraints deleted. - at3g51030: read peaks ./n15no.peaks assigned integrated Peak list "./n15no.peaks" read, 1023 peaks, 1023 assignments. - at3g51030: peaks set volume=abs(volume) Volume of 1023 peaks set. - at3g51030: atom shift check Atom Residue Shift Median Deviation Peaks HA TRP 27 4.494 4.494 0.032 3 HN ASP- 62 7.855 7.855 0.032 11 HA PHE 97 5.363 5.354 0.037 3 3 shifts with spread larger than tolerance. - at3g51030: caliba bb=8.0E+06 dmax=5.5 Calibration class: backbone 681 of 1023 peaks, 681 of 1023 assignments selected. Calibration function: 8.00E+06 * 1/d**6 571 upper limits added, 0 at lower, 0 at upper limit, average 3.78 A. Calibration class: side-chain 172 of 1023 peaks, 172 of 1023 assignments selected. 172 of 1023 peaks, 172 of 1023 assignments selected. Calibration function: 1.39E+06 * 1/d**4 153 upper limits added, 2 at lower, 69 at upper limit, average 5.09 A. Calibration class: methyl 170 of 1023 peaks, 170 of 1023 assignments selected. Calibration function: 4.63E+05 * 1/d**4 170 upper limits added, 0 at lower, 69 at upper limit, average 5.97 A. - at3g51030: write upl n15no_cal.upl Distance constraint file "n15no_cal.upl" written, 894 upper limits, 894 assignments. - at3g51030: distance delete 894 distance constraints deleted. - at3g51030: atom shift check Atom Residue Shift Median Deviation Peaks HA TRP 27 4.494 4.494 0.032 3 HN ASP- 62 7.855 7.855 0.032 11 HA PHE 97 5.363 5.354 0.037 3 3 shifts with spread larger than tolerance. - at3g51030: read peaks ./c13noar.peaks assigned integrated Peak list "./c13noar.peaks" read, 211 peaks, 211 assignments. - at3g51030: peaks set volume=abs(volume) Volume of 211 peaks set. - at3g51030: caliba bb=8.0E+06 dmax=6.0 Calibration class: backbone 0 of 211 peaks, 0 of 211 assignments selected. Calibration function: 8.00E+06 * 1/d**6 0 upper limits added. Calibration class: side-chain 153 of 211 peaks, 153 of 211 assignments selected. 153 of 211 peaks, 153 of 211 assignments selected. Calibration function: 1.39E+06 * 1/d**4 121 upper limits added, 0 at lower, 82 at upper limit, average 7.04 A. Calibration class: methyl 58 of 211 peaks, 58 of 211 assignments selected. Calibration function: 4.63E+05 * 1/d**4 58 upper limits added, 0 at lower, 37 at upper limit, average 7.84 A. - at3g51030: write upl c13no_ar_cal.upl Distance constraint file "c13no_ar_cal.upl" written, 179 upper limits, 179 assignments. - at3g51030: distance delete 179 distance constraints deleted. - at3g51030: read upl c13no_cal.upl Distance constraint file "c13no_cal.upl" read, 2034 upper limits, 2034 assignments. - at3g51030: read upl n15no_cal.upl append Distance constraint file "n15no_cal.upl" read, 894 upper limits, 894 assignments. - at3g51030: read upl c13no_ar_cal.upl append Distance constraint file "c13no_ar_cal.upl" read, 179 upper limits, 179 assignments. - at3g51030: distance modify Number of modified constraints: 1151 - at3g51030: distance check Distance constraint Score Upper HA ASP- 44 - HA PHE 95 7.50 Upper HA LEU 98 - HA LEU 104 18.00 Upper HA MET 96 - HA LYS+ 106 6.50 Upper HN PHE 97 - HA LYS+ 106 8.25 Upper HA LEU 98 - HN ASP- 105 11.25 Upper HA PHE 45 - HB VAL 75 7.75 Upper HA ALA 20 - HB2 LYS+ 74 6.25 Upper HA ALA 20 - HB3 LYS+ 74 6.25 Upper HB VAL 42 - HA PHE 72 4.00 Upper HB ILE 19 - HA LEU 73 3.25 Upper HA VAL 83 - HD1 TRP 87 6.00 Upper HB VAL 43 - HN MET 96 6.25 Upper HB2 PRO 52 - HD3 PRO 93 5.50 Upper HB3 PRO 52 - HD3 PRO 93 5.50 Upper QE PHE 59 - HA LEU 115 8.00 Upper HB2 LEU 63 - QE PHE 72 8.50 Upper HA ALA 64 - HZ PHE 72 9.00 Upper HB2 LEU 67 - HZ PHE 72 8.00 Upper HA ALA 84 - HB ILE 89 3.00 Upper QE PHE 45 - HB2 MET 96 5.75 Upper HG2 MET 96 - HG13 ILE 103 7.25 Upper HG3 MET 96 - HG13 ILE 103 7.25 Upper HB2 PHE 97 - HB3 ASP- 105 15.75 Upper HB3 PHE 97 - HB2 LEU 104 17.25 Upper HB3 PHE 97 - HB3 ASP- 105 15.75 Upper HN VAL 41 - QB LEU 98 4.75 Upper HB2 PHE 97 - HB2 LEU 104 17.25 Upper HN LYS+ 99 - HG LEU 104 12.75 Upper HB2 PHE 97 - HB2 ASP- 105 15.75 Upper QD PHE 97 - HA LYS+ 106 8.25 Upper QD PHE 95 - HB VAL 107 8.25 Upper QE PHE 59 - HB THR 118 4.00 Upper QD PHE 59 - HG13 ILE 119 6.00 Upper QD PHE 59 - HG12 ILE 119 6.00 Upper QE PHE 45 - QG2 VAL 75 7.75 Upper QD PHE 45 - QG2 THR 77 4.50 Upper QG2 ILE 19 - HE22 GLN 30 5.00 Upper QG2 ILE 19 - HE21 GLN 30 5.00 Upper QD1 ILE 19 - HE22 GLN 30 5.00 Upper HB2 CYS 21 - QD2 LEU 80 4.00 Upper HB3 CYS 21 - QD2 LEU 80 4.00 Upper HB3 TRP 27 - QD2 LEU 80 5.50 Upper HB2 TRP 27 - QD2 LEU 80 5.50 Upper HB3 GLN 30 - QD1 LEU 73 5.00 Upper HB2 GLN 30 - QD1 LEU 73 5.00 Upper HZ2 TRP 27 - QD1 LEU 31 8.25 Upper HZ3 TRP 27 - QG2 VAL 43 4.00 Upper QG2 ILE 56 - HA ALA 110 3.50 Upper QB ALA 34 - HB THR 39 1.00 Upper QB ALA 34 - QG1 VAL 41 4.00 Upper HB2 LEU 40 - QG2 VAL 70 14.50 Upper HB3 LEU 40 - QG2 VAL 70 14.50 Upper QD1 LEU 40 - QG2 VAL 70 14.50 Upper QD2 LEU 40 - QG2 VAL 70 14.50 Upper QB ALA 34 - QG2 VAL 41 4.00 Upper HB2 PHE 45 - QG2 THR 77 4.50 Upper HB2 PHE 45 - QG2 ILE 89 7.00 Upper HB3 PHE 45 - QG2 THR 77 4.50 Upper HB3 PHE 45 - QG2 ILE 89 7.00 Upper QG2 THR 46 - HA ASP- 76 5.75 Upper QD1 ILE 56 - QB ALA 110 3.50 Upper QD1 ILE 56 - HA ALA 110 3.50 Upper QB ALA 64 - HB3 PHE 72 9.00 Upper HA VAL 18 - QB ALA 64 1.50 Upper HA GLN 17 - QB ALA 64 1.00 Upper HN VAL 18 - QB ALA 64 1.50 Upper QB ALA 64 - QD PHE 72 9.00 Upper QB ALA 64 - HB2 PHE 72 9.00 Upper QB ALA 84 - QG2 ILE 89 3.00 Upper QD PHE 45 - QD1 ILE 89 7.00 Upper HD2 PRO 93 - QB ALA 110 3.50 Upper HD3 PRO 93 - QB ALA 110 3.50 Upper QG2 ILE 89 - HB THR 94 3.00 Upper QD1 ILE 89 - HB THR 94 3.00 Upper QD1 ILE 89 - QG2 THR 94 3.00 Upper QD1 ILE 89 - HB2 MET 96 3.00 Upper QD1 ILE 89 - HB3 MET 96 3.00 Upper HB2 LYS+ 99 - QD1 LEU 104 12.75 Upper QD2 LEU 40 - HB2 LYS+ 99 7.25 Upper QD1 LEU 98 - HG12 ILE 103 15.00 Upper QD1 LEU 98 - HG13 ILE 103 15.00 Upper HB2 LYS+ 99 - QD2 LEU 104 12.75 Upper HB2 ASP- 105 - QG2 THR 118 2.50 Upper QD1 ILE 56 - HA LYS+ 112 2.50 Upper QD1 ILE 56 - QE LYS+ 112 2.50 Upper QE PHE 59 - QD2 LEU 115 8.00 Upper HB3 ASP- 105 - QG2 THR 118 2.50 Upper QG2 THR 118 - HD2 HIS 122 4.00 Upper QD2 LEU 115 - HG12 ILE 119 8.00 Upper QD2 LEU 115 - HG13 ILE 119 8.00 Upper HB3 LYS+ 99 - QD1 LEU 104 12.75 Upper QD2 LEU 40 - HB3 LYS+ 99 7.25 Upper HN ILE 19 - HA LEU 73 3.25 Upper HN CYS 21 - HN LYS+ 74 4.50 Upper HN THR 23 - HN TRP 27 6.25 Upper HN VAL 42 - HA PHE 72 4.00 Upper HN ASP- 44 - HA LYS+ 74 5.50 Upper HN PHE 45 - HN THR 94 8.25 Upper HN PHE 45 - HA PHE 95 8.25 Upper HN THR 46 - HA ASP- 76 5.75 Upper HN THR 46 - HN THR 77 5.00 Upper HA ALA 57 - HN ALA 61 0.75 Upper HA VAL 41 - HN LEU 71 6.25 Upper HN VAL 42 - HN LEU 71 3.00 Upper HA VAL 43 - HN LEU 73 4.50 Upper HA ALA 20 - HN LYS+ 74 6.25 Upper HA ALA 47 - HN THR 77 2.50 Upper HN PHE 95 - HN VAL 107 8.25 Upper HN VAL 41 - HN LEU 98 4.75 Upper HA VAL 42 - HN LEU 98 1.75 Upper HA LEU 98 - HN LEU 104 18.00 Upper HN PHE 97 - HN ASP- 105 15.75 Upper HN VAL 43 - HA PHE 97 3.00 Upper HN LEU 40 - HA VAL 70 14.50 Upper HA ALA 34 - HN THR 39 1.00 Upper HA VAL 24 - HN ASN 28 10.25 Upper HN ILE 19 - HN LYS+ 74 4.00 Upper HN VAL 43 - HN MET 96 6.25 Upper HN ASP- 44 - HN LEU 73 4.00 Upper HA PHE 45 - HN VAL 75 7.75 Upper HN CYS 21 - HA VAL 75 4.00 Upper HA ASP- 44 - HN MET 96 7.00 Upper HN LYS+ 99 - HA LEU 104 12.75 Upper HZ2 TRP 27 - HE1 TRP 87 2.00 Upper QD PHE 97 - HN VAL 107 2.25 Upper QD PHE 97 - HN ASP- 105 15.75 Upper HB2 PHE 97 - HN ASP- 105 15.75 Upper HB3 PHE 97 - HN ASP- 105 15.75 Upper HN PHE 95 - HB VAL 107 8.25 Upper HB2 PHE 45 - HN THR 94 8.25 Upper HB3 PHE 45 - HN THR 94 8.25 Upper HN PHE 45 - HB THR 94 8.25 Upper HN LEU 40 - QE LYS+ 99 7.25 Upper QE PHE 59 - HN ILE 119 6.00 Upper HE1 TRP 27 - HE1 TRP 87 2.00 Upper QB LEU 98 - HN ILE 103 15.00 Upper HB ILE 19 - HN LYS+ 74 4.00 Upper HN LYS+ 106 - QG2 THR 118 2.50 Upper QD1 ILE 56 - HN LYS+ 111 3.50 Upper QD1 ILE 56 - HN LYS+ 112 2.50 Upper HN LYS+ 99 - QD2 LEU 104 12.75 Upper HN LYS+ 99 - QD1 LEU 104 12.75 Upper HN PHE 97 - QG2 ILE 103 12.00 Upper QD1 ILE 89 - HN MET 96 3.00 Upper QG2 ILE 89 - HN THR 94 3.00 Upper QB ALA 47 - HN THR 77 2.50 Upper HN ILE 56 - QB ALA 110 3.50 Upper HN THR 46 - QG2 THR 77 5.00 Upper HN PHE 45 - QD1 ILE 89 7.00 Upper QB ALA 34 - HN VAL 41 4.00 Upper HN LEU 40 - QG1 VAL 70 14.50 Upper HN LEU 40 - QG2 VAL 70 14.50 Upper QG2 VAL 24 - HD22 ASN 28 10.25 Upper QG2 THR 26 - HN GLN 30 4.00 Upper QD1 ILE 19 - HE21 GLN 30 5.00 Upper QG2 VAL 24 - HD21 ASN 28 10.25 Upper QB ALA 64 - HN PHE 72 9.00 Upper QD PHE 45 - HB VAL 75 7.75 Upper QE PHE 45 - HB ILE 89 7.00 Upper QE PHE 45 - HB3 MET 96 5.75 Upper QD PHE 45 - HB3 MET 96 5.75 Upper QD PHE 45 - HB2 MET 96 5.75 Upper QD PHE 45 - HB THR 94 8.25 Upper QE PHE 95 - HB VAL 107 8.25 Upper QG1 ILE 56 - QE PHE 95 0.00 Upper QD PHE 59 - HN LEU 115 8.00 Upper QD PHE 59 - HA ILE 119 6.00 Upper QE PHE 59 - HG12 ILE 119 6.00 Upper QE PHE 59 - HG13 ILE 119 6.00 Upper HB VAL 42 - QE PHE 60 0.00 Upper QD PHE 60 - QD PHE 72 4.00 Upper QE PHE 60 - QD PHE 72 4.00 Upper QD PHE 60 - QE PHE 72 4.00 Upper HB VAL 42 - QD PHE 72 4.00 Upper HA ALA 64 - QE PHE 72 9.00 Upper HB2 LEU 67 - QE PHE 72 8.00 Upper HB3 LEU 67 - QE PHE 72 8.00 Upper HB3 LEU 63 - QE PHE 72 8.50 Upper HB3 LEU 67 - HZ PHE 72 8.00 Upper HZ2 TRP 27 - HZ2 TRP 87 2.00 Upper HA ASP- 44 - QD PHE 95 7.50 Upper HD1 TRP 27 - QG1 VAL 83 3.00 Upper HD1 TRP 27 - QG2 VAL 83 3.00 Upper HZ3 TRP 27 - QG1 VAL 43 4.00 Upper HZ2 TRP 27 - QD2 LEU 31 8.25 Upper QE PHE 45 - QD1 ILE 89 7.00 Upper QD PHE 45 - QG2 THR 94 8.25 Upper QE PHE 45 - QG1 VAL 75 7.75 Upper HZ PHE 45 - QD1 ILE 89 7.00 Upper QD1 ILE 56 - QD PHE 60 2.25 Upper QD PHE 60 - QB ALA 64 3.50 Upper QD PHE 59 - QD2 LEU 115 8.00 Upper QD PHE 59 - QD1 LEU 115 8.00 Upper QE PHE 59 - QD1 LEU 115 8.00 Upper QE PHE 59 - QG2 THR 118 4.00 Upper QB ALA 64 - QE PHE 72 9.00 Upper HH2 TRP 87 - QD2 LEU 98 3.00 Upper HH2 TRP 87 - QD1 LEU 98 3.00 Upper QG2 VAL 83 - HD1 TRP 87 6.00 Upper QG1 VAL 83 - HD1 TRP 87 6.00 Upper HA VAL 18 - QB PHE 72 0.50 Upper QG2 ILE 19 - QG GLN 30 5.00 Upper QD1 ILE 19 - QG GLN 30 5.00 Upper HA ALA 20 - QB LYS+ 74 6.25 Upper HN CYS 21 - QB LYS+ 74 4.50 Upper HN CYS 21 - QQG VAL 75 4.00 Upper QB CYS 21 - QG2 THR 26 0.50 Upper QB CYS 21 - HN TRP 27 0.50 Upper QB CYS 21 - QQG VAL 75 4.00 Upper QB CYS 21 - QQD LEU 80 4.00 Upper HB2 CYS 21 - QD1 LEU 80 4.00 Upper HB3 CYS 21 - QD1 LEU 80 4.00 Upper HN THR 23 - QQD LEU 80 2.50 Upper HA THR 23 - QQD LEU 80 2.50 Upper HN VAL 24 - QQD LEU 80 3.00 Upper HA VAL 24 - QQD LEU 80 3.00 Upper HB VAL 24 - QQD LEU 80 3.00 Upper QQG VAL 24 - HN ASN 28 10.25 Upper QQG VAL 24 - QD2 ASN 28 10.25 Upper QG1 VAL 24 - HD21 ASN 28 10.25 Upper QG1 VAL 24 - HD22 ASN 28 10.25 Upper QQG VAL 24 - QQG VAL 83 0.00 Upper QG2 THR 26 - QG GLN 30 4.00 Upper HN TRP 27 - QQG VAL 75 2.00 Upper HN TRP 27 - QQD LEU 80 5.50 Upper QB TRP 27 - QQD LEU 80 5.50 Upper HB2 TRP 27 - QD1 LEU 80 5.50 Upper HB3 TRP 27 - QD1 LEU 80 5.50 Upper HD1 TRP 27 - QQG VAL 83 3.00 Upper HE3 TRP 27 - QQG VAL 43 4.00 Upper HE3 TRP 27 - QB LEU 73 3.00 Upper HE3 TRP 27 - QQD LEU 73 3.00 Upper HE3 TRP 27 - QQG VAL 75 2.00 Upper HE1 TRP 27 - QQD LEU 31 8.25 Upper HE1 TRP 27 - QQG VAL 83 3.00 Upper HZ3 TRP 27 - QQD LEU 31 8.25 Upper HZ3 TRP 27 - QQG VAL 43 4.00 Upper HZ3 TRP 27 - QQD LEU 73 3.00 Upper HZ3 TRP 27 - QQG VAL 75 2.00 Upper HZ2 TRP 27 - QQD LEU 31 8.25 Upper HH2 TRP 27 - QQD LEU 31 8.25 Upper HH2 TRP 27 - QQG VAL 43 4.00 Upper HH2 TRP 27 - QQD LEU 73 3.00 Upper HN ASN 28 - QQD LEU 80 3.00 Upper QB GLN 30 - QQD LEU 73 5.00 Upper HB2 GLN 30 - QD2 LEU 73 5.00 Upper HB3 GLN 30 - QD2 LEU 73 5.00 Upper HN LEU 31 - QQD LEU 73 3.50 Upper HA LEU 31 - QQD LEU 73 3.50 Upper QQD LEU 31 - HZ2 TRP 87 1.00 Upper QQD LEU 31 - HH2 TRP 87 1.00 Upper HN ALA 34 - QQG VAL 41 4.00 Upper QB ALA 34 - QQG VAL 41 4.00 Upper HN LEU 40 - QQG VAL 70 14.50 Upper QB LEU 40 - QQG VAL 70 14.50 Upper HB2 LEU 40 - QG1 VAL 70 14.50 Upper HB3 LEU 40 - QG1 VAL 70 14.50 Upper HG LEU 40 - QQG VAL 70 14.50 Upper QQD LEU 40 - QQG VAL 70 14.50 Upper QD1 LEU 40 - QG1 VAL 70 14.50 Upper QD2 LEU 40 - QG1 VAL 70 14.50 Upper QQD LEU 40 - HN LEU 98 5.00 Upper QQD LEU 40 - QB LYS+ 99 7.25 Upper QD1 LEU 40 - HB2 LYS+ 99 7.25 Upper QD1 LEU 40 - HB3 LYS+ 99 7.25 Upper QQD LEU 40 - QE LYS+ 99 7.25 Upper HA VAL 41 - QB LEU 71 6.25 Upper QQG VAL 41 - HG LEU 73 0.75 Upper QQG VAL 41 - HN LEU 98 4.75 Upper HN VAL 42 - QQG VAL 70 1.00 Upper QQG VAL 42 - QB PHE 95 2.25 Upper QQG VAL 42 - QD PHE 95 2.25 Upper HN VAL 43 - QB MET 96 6.25 Upper HA VAL 43 - QB LEU 73 4.50 Upper QQG VAL 43 - HN LEU 73 4.50 Upper QQG VAL 43 - HN MET 96 6.25 Upper QQG VAL 43 - QB MET 96 6.25 Upper HN ASP- 44 - QB LEU 73 4.00 Upper HN ASP- 44 - QB LYS+ 74 5.50 Upper QB ASP- 44 - HA LYS+ 74 5.50 Upper QB ASP- 44 - QD PHE 95 7.50 Upper QB PHE 45 - QG2 THR 77 4.50 Upper QB PHE 45 - QG2 ILE 89 7.00 Upper QB PHE 45 - HN THR 94 8.25 Upper QB PHE 45 - HB THR 94 8.25 Upper QD PHE 45 - QQG VAL 75 7.75 Upper QE PHE 45 - QQG VAL 75 7.75 Upper QE PHE 45 - QB MET 96 5.75 Upper HN THR 46 - QQG VAL 75 4.50 Upper QB PRO 52 - QD PRO 93 5.50 Upper HB2 PRO 52 - HD2 PRO 93 5.50 Upper HB3 PRO 52 - HD2 PRO 93 5.50 Upper QG PRO 52 - QD PRO 93 5.50 Upper HN CYSS 53 - QD PRO 93 3.00 Upper QD PHE 59 - QB LEU 115 8.00 Upper QD PHE 59 - QQD LEU 115 8.00 Upper QE PHE 59 - QQD LEU 115 8.00 Upper QD PHE 60 - QB PHE 72 4.00 Upper QE PHE 60 - QB PHE 72 4.00 Upper QB LEU 63 - QE PHE 72 8.50 Upper QB LEU 63 - HZ PHE 72 8.50 Upper QQD LEU 63 - QE PHE 72 8.50 Upper QQD LEU 63 - HZ PHE 72 8.50 Upper QQD LEU 63 - QB PHE 95 2.00 Upper QQD LEU 63 - QD PHE 95 2.00 Upper QQD LEU 63 - QE PHE 95 2.00 Upper QB LEU 67 - QE PHE 72 8.00 Upper QB LEU 67 - HZ PHE 72 8.00 Upper QQD LEU 67 - QD PHE 72 8.00 Upper QQD LEU 67 - QE PHE 72 8.00 Upper QQD LEU 67 - HZ PHE 72 8.00 Upper QB ASP- 76 - HN LEU 80 3.00 Upper QQG VAL 83 - HD1 TRP 87 6.00 Upper QQG VAL 83 - HE1 TRP 87 6.00 Upper HA ALA 84 - QG1 ILE 89 3.00 Upper QB ALA 84 - QG1 ILE 89 3.00 Upper HZ2 TRP 87 - QQD LEU 98 3.00 Upper HH2 TRP 87 - QQD LEU 98 3.00 Upper QD1 ILE 89 - QB MET 96 3.00 Upper QG PRO 93 - HN ALA 110 3.50 Upper QD PRO 93 - QA GLY 109 2.00 Upper QD PRO 93 - HN ALA 110 3.50 Upper QB PHE 95 - HN VAL 107 8.25 Upper QB PHE 95 - HB VAL 107 8.25 Upper QB PHE 95 - QQG VAL 107 8.25 Upper QD PHE 95 - QQG VAL 107 8.25 Upper QE PHE 95 - QQG VAL 107 8.25 Upper QE PHE 95 - QB LEU 115 1.00 Upper QE PHE 95 - QQD LEU 115 1.00 Upper QG MET 96 - QG2 ILE 103 7.25 Upper QG MET 96 - QG1 ILE 103 7.25 Upper HG2 MET 96 - HG12 ILE 103 7.25 Upper HG3 MET 96 - HG12 ILE 103 7.25 Upper QB PHE 97 - HN LEU 104 17.25 Upper QB PHE 97 - QB LEU 104 17.25 Upper HB2 PHE 97 - HB3 LEU 104 17.25 Upper HB3 PHE 97 - HB3 LEU 104 17.25 Upper QB PHE 97 - HN ASP- 105 15.75 Upper QB PHE 97 - QB ASP- 105 15.75 Upper HB3 PHE 97 - HB2 ASP- 105 15.75 Upper QD PHE 97 - QB LEU 104 17.25 Upper QD PHE 97 - QB ASP- 105 15.75 Upper QD PHE 97 - QQG VAL 107 2.25 Upper HN LEU 98 - QG1 ILE 103 15.00 Upper HA LEU 98 - QG1 ILE 103 15.00 Upper QB LEU 98 - QG1 ILE 103 15.00 Upper QQD LEU 98 - HA ILE 103 15.00 Upper QQD LEU 98 - QG1 ILE 103 15.00 Upper QD2 LEU 98 - HG12 ILE 103 15.00 Upper QD2 LEU 98 - HG13 ILE 103 15.00 Upper HN LYS+ 99 - QQD LEU 104 12.75 Upper QB LYS+ 99 - QQD LEU 104 12.75 Upper HB3 LYS+ 99 - QD2 LEU 104 12.75 Upper QB ASP- 105 - QG2 THR 118 2.50 Upper QQG VAL 107 - HN GLU- 114 2.50 Upper QQG VAL 107 - QB GLU- 114 2.50 Upper QQG VAL 107 - QG GLU- 114 2.50 Upper QQG VAL 107 - HN LEU 115 1.50 Upper QQG VAL 107 - HB THR 118 1.50 Upper QQG VAL 107 - QG2 THR 118 1.50 Upper QQD LEU 115 - HN ILE 119 8.00 Upper QQD LEU 115 - QG1 ILE 119 8.00 Upper QD1 LEU 115 - HG12 ILE 119 8.00 Upper QD1 LEU 115 - HG13 ILE 119 8.00 Upper QQD LEU 115 - QD1 ILE 119 8.00 - at3g51030: write upl at3g51030.upl Distance constraint file "at3g51030.upl" written, 1151 upper limits, 1151 assignments. - at3g51030: read aco at3g51030.aco *** WARNING: Wrong name "CYS" for residue CYSS 53. Angle constraint file "at3g51030.aco" read, 169 constraints for 169 angles. - at3g51030: distance stat Residue intra short med long Total 298 347 214 292 - at3g51030: calc_all 100 command=anneal steps=10000 100 structures selected. 100 random structures created (seed 35621). Structure annealed in 34 s, f = 52.8607. Structure annealed in 34 s, f = 0.196901. Structure annealed in 32 s, f = 9.58671. Structure annealed in 33 s, f = 0.362347. Structure annealed in 33 s, f = 0.294487. Structure annealed in 33 s, f = 0.506499. Structure annealed in 33 s, f = 0.161817. Structure annealed in 34 s, f = 23.1417. Structure annealed in 34 s, f = 0.123458. Structure annealed in 33 s, f = 0.322008. Structure annealed in 32 s, f = 3.74156. Structure annealed in 33 s, f = 1.60231. Structure annealed in 33 s, f = 33.1991. Structure annealed in 33 s, f = 0.288536. Structure annealed in 34 s, f = 47.8819. Structure annealed in 33 s, f = 3.32344. Structure annealed in 33 s, f = 0.434804. Structure annealed in 33 s, f = 0.357356. Structure annealed in 33 s, f = 0.151339. Structure annealed in 33 s, f = 6.89443. Structure annealed in 33 s, f = 0.484005. Structure annealed in 33 s, f = 0.485434. Structure annealed in 32 s, f = 12.7570. Structure annealed in 33 s, f = 0.270618. Structure annealed in 32 s, f = 2.54124. Structure annealed in 34 s, f = 0.347524. Structure annealed in 33 s, f = 0.273691. Structure annealed in 33 s, f = 0.549807. Structure annealed in 32 s, f = 4.28580. Structure annealed in 33 s, f = 1.59305. Structure annealed in 32 s, f = 2.65636. Structure annealed in 33 s, f = 0.341469. Structure annealed in 32 s, f = 2.04129. Structure annealed in 34 s, f = 52.8191. Structure annealed in 34 s, f = 0.227963. Structure annealed in 33 s, f = 0.199784. Structure annealed in 33 s, f = 32.8854. Structure annealed in 33 s, f = 0.153158. Structure annealed in 34 s, f = 0.124799. Structure annealed in 32 s, f = 3.33836. Structure annealed in 32 s, f = 7.32027. Structure annealed in 33 s, f = 6.58048. Structure annealed in 32 s, f = 0.521945. Structure annealed in 33 s, f = 7.42121. Structure annealed in 33 s, f = 0.450579. Structure annealed in 33 s, f = 27.5042. Structure annealed in 33 s, f = 0.430337. Structure annealed in 34 s, f = 39.3713. Structure annealed in 32 s, f = 16.5992. Structure annealed in 33 s, f = 0.528714. Structure annealed in 33 s, f = 30.9021. Structure annealed in 34 s, f = 39.9307. Structure annealed in 33 s, f = 0.362642. Structure annealed in 34 s, f = 7.986257E-02. Structure annealed in 33 s, f = 38.3346. Structure annealed in 33 s, f = 5.56876. Structure annealed in 32 s, f = 2.65725. Structure annealed in 34 s, f = 43.8331. Structure annealed in 32 s, f = 6.82375. Structure annealed in 34 s, f = 0.490399. Structure annealed in 33 s, f = 8.23420. Structure annealed in 32 s, f = 5.79520. Structure annealed in 32 s, f = 2.48023. Structure annealed in 34 s, f = 56.4215. Structure annealed in 32 s, f = 5.67079. Structure annealed in 33 s, f = 0.134629. Structure annealed in 32 s, f = 2.98400. Structure annealed in 33 s, f = 0.333018. Structure annealed in 32 s, f = 1.53983. Structure annealed in 33 s, f = 3.02093. Structure annealed in 34 s, f = 53.7177. Structure annealed in 34 s, f = 0.395033. Structure annealed in 33 s, f = 5.600565E-02. Structure annealed in 34 s, f = 44.8124. Structure annealed in 33 s, f = 37.8932. Structure annealed in 33 s, f = 0.645729. Structure annealed in 33 s, f = 0.691656. Structure annealed in 33 s, f = 2.62081. Structure annealed in 33 s, f = 4.92447. Structure annealed in 33 s, f = 0.698889. Structure annealed in 32 s, f = 3.60221. Structure annealed in 33 s, f = 0.286791. Structure annealed in 32 s, f = 0.298973. Structure annealed in 33 s, f = 0.193814. Structure annealed in 32 s, f = 0.131719. Structure annealed in 33 s, f = 11.8422. Structure annealed in 33 s, f = 0.280775. Structure annealed in 33 s, f = 0.428592. Structure annealed in 33 s, f = 0.207746. Structure annealed in 33 s, f = 0.977229. Structure annealed in 32 s, f = 0.297584. Structure annealed in 33 s, f = 3.01697. Structure annealed in 33 s, f = 0.338726. Structure annealed in 33 s, f = 0.472336. Structure annealed in 33 s, f = 33.7122. Structure annealed in 34 s, f = 94.0947. Structure annealed in 33 s, f = 64.7181. Structure annealed in 35 s, f = 0.400425. Structure annealed in 32 s, f = 3.84959. Structure annealed in 29 s, f = 62.8214. 100 structures finished in 1661 s (16 s/structure). - at3g51030: overview structures=20 range=16..123 cor full 20 structures selected. Structural statistics: str target upper limits van der Waals torsion angles function # sum max # sum max # sum max 1 5.60E-02 0 0.2 0.08 0 0.4 0.10 0 0.8 0.80 2 7.99E-02 0 0.5 0.08 0 0.6 0.07 0 5.2 1.77 3 0.12 0 0.2 0.06 0 1.0 0.15 0 8.5 1.71 4 0.12 0 0.6 0.16 0 1.0 0.13 0 7.5 0.83 5 0.13 0 0.4 0.15 0 0.8 0.13 0 1.4 0.43 6 0.13 0 0.7 0.15 0 0.7 0.13 0 3.0 0.80 7 0.15 0 0.6 0.16 0 0.8 0.13 0 2.0 1.27 8 0.15 0 0.7 0.12 0 0.8 0.14 0 1.9 0.78 9 0.16 0 0.9 0.19 0 0.5 0.13 0 7.2 2.76 10 0.19 0 0.7 0.14 0 0.9 0.13 0 7.5 2.07 11 0.20 1 0.9 0.25 0 0.8 0.13 0 3.6 0.81 12 0.20 0 0.7 0.18 0 0.7 0.13 0 3.1 2.28 13 0.21 0 0.8 0.20 0 0.9 0.14 0 4.2 1.19 14 0.23 1 1.0 0.23 0 1.1 0.13 0 2.8 1.35 15 0.27 0 0.6 0.10 1 1.0 0.25 0 8.8 2.44 16 0.27 0 0.5 0.10 1 1.1 0.22 0 11.4 2.72 17 0.28 2 1.2 0.22 0 0.9 0.13 0 3.6 1.49 18 0.29 1 1.0 0.45 0 0.6 0.07 0 1.4 0.49 19 0.29 0 0.7 0.13 0 1.1 0.19 0 13.1 2.98 20 0.29 0 0.7 0.16 0 1.2 0.18 0 12.3 3.46 Ave 0.19 0 0.7 0.16 0 0.8 0.14 0 5.5 1.62 +/- 7.16E-02 1 0.2 0.08 0 0.2 0.04 0 3.7 0.88 Min 5.60E-02 0 0.2 0.06 0 0.4 0.07 0 0.8 0.43 Max 0.29 2 1.2 0.45 1 1.2 0.25 0 13.1 3.46 Overview file "at3g51030.ovw" written. DG coordinate file "at3g51030.cor" written, 20 conformers. - at3g51030: ramachandran nobackground label Struct fav add gen dis ------ --- --- --- --- 1 94 16 1 2 (CYSS 50, GLU- 100) 2 89 21 1 2 (HIS 6, GLU- 100) 3 93 14 4 2 (GLU- 15, GLU- 100) 4 93 16 4 0 5 98 12 2 1 (CYSS 50) 6 91 17 3 2 (LEU 9, SER 13) 7 95 12 2 4 (HIS 4, LEU 9, CYSS 50, GLU- 100) 8 92 19 0 2 (HIS 4, GLU- 15) 9 93 18 0 2 (GLU- 15, GLU- 100) 10 91 18 3 1 (GLU- 100) 11 95 17 1 0 12 89 21 2 1 (GLU- 100) 13 93 17 2 1 (GLU- 100) 14 93 16 1 3 (HIS 4, HIS 7, GLU- 100) 15 95 15 2 1 (GLU- 15) 16 93 16 3 1 (MET 11) 17 98 12 1 2 (CYSS 50, GLU- 100) 18 92 19 2 0 19 98 12 2 1 (CYSS 50) 20 97 11 3 2 (GLU- 15, CYSS 50) all 83% 14% 2% 1% Postscript file "ramachandran.ps" written. cyana> LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University 13-Aug-2004 14:35:36